PROJECTS FOR BioHackathon MENA 2023
List and descriptions of all projects can be found in our Github repository (opens a new tab)
- Project 1: Toward the treatment of Vaso-Occlusive Crisis: A Reinforcement learning-based approach for non-opioid drug discover
- Project 2: A reproducible workflow using Nextflow for protein Molecular Dynamics (MD) simulations with documentation that supports RTL languages and non-Latin scripts.
- Project 3: Embedding ontologies
- Project 4: End to end framework to enable analyzing data from DNA sequencing experiments utilizing AI
- Project 5: DNApredict
- Project 6: Improving prokaryotic genome annotation through an interoperable and multi-platform bioinformatic pipeline.
- Project 7: MetaboliteNET: building a metabolite centric knowledge base by ontology-based mining annotations from literature
- Project 8: Open MENA Microbiome Project
- Project 9: The Middle East molecular database
- Project 10: Reproducing Machine Learning and AI methods using FAIR Workbench
- Project 11: Diabetes Atlas for MENA
- Project 12: Bacteria sensing in wastewater treatment processes using transformer models
- Project 13: Document similarity of articles in the bio-medical domain using multilabel-classification and ontology embeddings.
- Project 14: The ELIXIR::GA4GH Cloud - Global Engagement
- Project 15: Genome workflows and resources for the MENA population
- Project 16: Metadata for Science with (bio)schemas
- Project 17: Creating a FAIR and Harmonized Ontology for Diseases and Phenotypes
- Project 18: Cloud-native data analysis workflow execution service and quality assessment of published workflows
- Project 19: Agile textmining with PubAnnotation/PubDictionaries, and its application to MENA Bioinformatics
- Project 20: mOWL: Python library for machine learning with biomedical ontologies
- Project 21: Harmonizing COVID-19 Epidemiology Ontologies
- Project 22: Predicting the risk of food contamination using machine learning models